GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv20983700 [ AET5Gv20983700]	5D	497130143	497133500	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv20983700.1 AET5Gv20983700.1	High	No	340	OG0006777		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -20.676 AMFE: -0.591 GC content %: 35.000
Atauschii_AET5Gv20983700.10 AET5Gv20983700.10	High	No	428	OG0004793		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -33.902 AMFE: -0.535 GC content %: 63.318
Atauschii_AET5Gv20983700.2 AET5Gv20983700.2	High	No	739	OG0004793		Get ORF Coding potential... Type: noncoding Potential: -0.658 Folding energies... MFEI: -25.304 AMFE: -0.673 GC content %: 37.618
Atauschii_AET5Gv20983700.3 AET5Gv20983700.3	High	No	1418	OG0004793		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -29.238 AMFE: -0.646 GC content %: 45.275
Atauschii_AET5Gv20983700.4 AET5Gv20983700.4	High	No	1297	OG0004793		Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -29.823 AMFE: -0.645 GC content %: 46.261

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).