Atauschii AET5Gv21017300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21017300 [ AET5Gv21017300] |
5D | 507073088 | 507078113 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21017300.1 AET5Gv21017300.1 |
High | No | 2000 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -34.050 AMFE: -0.682 GC content %: 49.900 | |
| Atauschii_AET5Gv21017300.10 AET5Gv21017300.10 |
High | No | 2286 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -32.528 AMFE: -0.673 GC content %: 48.338 | |
| Atauschii_AET5Gv21017300.11 AET5Gv21017300.11 |
High | No | 2516 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -31.753 AMFE: -0.686 GC content %: 46.304 | |
| Atauschii_AET5Gv21017300.12 AET5Gv21017300.12 |
High | No | 1970 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -34.310 AMFE: -0.688 GC content %: 49.848 | |
| Atauschii_AET5Gv21017300.13 AET5Gv21017300.13 |
High | No | 2440 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -32.615 AMFE: -0.690 GC content %: 47.254 | |
| Atauschii_AET5Gv21017300.14 AET5Gv21017300.14 |
High | No | 2222 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -32.912 AMFE: -0.682 GC content %: 48.290 | |
| Atauschii_AET5Gv21017300.15 AET5Gv21017300.15 |
High | No | 2208 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -32.695 AMFE: -0.679 GC content %: 48.143 | |
| Atauschii_AET5Gv21017300.16 AET5Gv21017300.16 |
High | No | 2612 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -31.482 AMFE: -0.684 GC content %: 46.057 | |
| Atauschii_AET5Gv21017300.17 AET5Gv21017300.17 |
High | No | 1955 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -34.118 AMFE: -0.679 GC content %: 50.230 | |
| Atauschii_AET5Gv21017300.18 AET5Gv21017300.18 |
High | No | 2954 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -30.775 AMFE: -0.689 GC content %: 44.651 | |
| Atauschii_AET5Gv21017300.19 AET5Gv21017300.19 |
High | No | 2707 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.183 Folding energies... MFEI: -31.478 AMFE: -0.681 GC content %: 46.214 | |
| Atauschii_AET5Gv21017300.2 AET5Gv21017300.2 |
High | No | 2883 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -31.249 AMFE: -0.695 GC content %: 44.953 | |
| Atauschii_AET5Gv21017300.20 AET5Gv21017300.20 |
High | No | 2198 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -32.398 AMFE: -0.668 GC content %: 48.499 | |
| Atauschii_AET5Gv21017300.21 AET5Gv21017300.21 |
High | No | 2429 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -31.709 AMFE: -0.680 GC content %: 46.604 | |
| Atauschii_AET5Gv21017300.22 AET5Gv21017300.22 |
High | No | 2864 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -30.604 AMFE: -0.684 GC content %: 44.728 | |
| Atauschii_AET5Gv21017300.23 AET5Gv21017300.23 |
High | No | 2005 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -33.910 AMFE: -0.679 GC content %: 49.975 | |
| Atauschii_AET5Gv21017300.24 AET5Gv21017300.24 |
High | No | 601 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -29.085 AMFE: -0.652 GC content %: 44.592 | |
| Atauschii_AET5Gv21017300.25 AET5Gv21017300.25 |
High | No | 2156 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -33.098 AMFE: -0.682 GC content %: 48.516 | |
| Atauschii_AET5Gv21017300.26 AET5Gv21017300.26 |
High | No | 2515 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -31.642 AMFE: -0.683 GC content %: 46.322 | |
| Atauschii_AET5Gv21017300.27 AET5Gv21017300.27 |
High | No | 2578 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -31.695 AMFE: -0.687 GC content %: 46.121 | |
| Atauschii_AET5Gv21017300.28 AET5Gv21017300.28 |
High | No | 2467 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -31.682 AMFE: -0.680 GC content %: 46.575 | |
| Atauschii_AET5Gv21017300.29 AET5Gv21017300.29 |
High | No | 1928 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -34.590 AMFE: -0.689 GC content %: 50.207 | |
| Atauschii_AET5Gv21017300.3 AET5Gv21017300.3 |
High | No | 2260 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.260 Folding energies... MFEI: -32.996 AMFE: -0.688 GC content %: 47.965 | |
| Atauschii_AET5Gv21017300.30 AET5Gv21017300.30 |
High | No | 2463 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -31.730 AMFE: -0.684 GC content %: 46.407 | |
| Atauschii_AET5Gv21017300.31 AET5Gv21017300.31 |
High | No | 2140 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -32.402 AMFE: -0.659 GC content %: 49.159 | |
| Atauschii_AET5Gv21017300.32 AET5Gv21017300.32 |
High | No | 2854 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -29.100 AMFE: -0.665 GC content %: 43.728 | |
| Atauschii_AET5Gv21017300.33 AET5Gv21017300.33 |
High | No | 1199 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -34.220 AMFE: -0.652 GC content %: 52.460 | |
| Atauschii_AET5Gv21017300.34 AET5Gv21017300.34 |
High | No | 1389 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -33.405 AMFE: -0.677 GC content %: 49.316 | |
| Atauschii_AET5Gv21017300.4 AET5Gv21017300.4 |
High | No | 2197 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -33.259 AMFE: -0.690 GC content %: 48.202 | |
| Atauschii_AET5Gv21017300.5 AET5Gv21017300.5 |
High | No | 2919 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.190 Folding energies... MFEI: -30.829 AMFE: -0.690 GC content %: 44.707 | |
| Atauschii_AET5Gv21017300.6 AET5Gv21017300.6 |
High | No | 3176 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -31.105 AMFE: -0.684 GC content %: 45.497 | |
| Atauschii_AET5Gv21017300.7 AET5Gv21017300.7 |
High | No | 2683 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -31.457 AMFE: -0.680 GC content %: 46.291 | |
| Atauschii_AET5Gv21017300.8 AET5Gv21017300.8 |
High | No | 2560 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -31.289 AMFE: -0.676 GC content %: 46.289 | |
| Atauschii_AET5Gv21017300.9 AET5Gv21017300.9 |
High | No | 1992 | OG0000147 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -33.785 AMFE: -0.674 GC content %: 50.151 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
