Atauschii AET5Gv21077700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21077700 [ AET5Gv21077700] |
5D | 527948979 | 527953333 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21077700.1 AET5Gv21077700.1 |
Low | No | 1554 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.170 Folding energies... MFEI: -30.418 AMFE: -0.611 GC content %: 49.807 | |
| Atauschii_AET5Gv21077700.2 AET5Gv21077700.2 |
Low | No | 1456 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -30.852 AMFE: -0.613 GC content %: 50.343 | |
| Atauschii_AET5Gv21077700.3 AET5Gv21077700.3 |
Low | No | 1571 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -30.407 AMFE: -0.612 GC content %: 49.714 | |
| Atauschii_AET5Gv21077700.4 AET5Gv21077700.4 |
Low | No | 1557 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -30.411 AMFE: -0.610 GC content %: 49.839 | |
| Atauschii_AET5Gv21077700.5 AET5Gv21077700.5 |
Low | No | 1472 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -30.870 AMFE: -0.614 GC content %: 50.272 | |
| Atauschii_AET5Gv21077700.6 AET5Gv21077700.6 |
Low | No | 1573 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -30.432 AMFE: -0.611 GC content %: 49.777 | |
| Atauschii_AET5Gv21077700.7 AET5Gv21077700.7 |
Low | No | 1189 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -0.861 Folding energies... MFEI: -32.229 AMFE: -0.597 GC content %: 53.995 | |
| Atauschii_AET5Gv21077700.8 AET5Gv21077700.8 |
High | No | 1231 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -23.331 AMFE: -0.550 GC content %: 42.405 | |
| Atauschii_AET5Gv21077700.9 AET5Gv21077700.9 |
High | No | 1174 | OG0002395 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -23.220 AMFE: -0.540 GC content %: 43.015 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv21077700.3 | SwissProt | 2021-04-01 | Q84RR0 | 4.03e-8 |
| Atauschii_AET5Gv21077700.4 | SwissProt | 2021-04-01 | Q84RR0 | 3.99e-8 |
| Atauschii_AET5Gv21077700.5 | SwissProt | 2021-04-01 | Q84RR0 | 3.23e-8 |
| Atauschii_AET5Gv21077700.6 | SwissProt | 2021-04-01 | Q84RR0 | 4.03e-8 |
| Atauschii_AET5Gv21077700.1 | SwissProt | 2021-04-01 | Q84RR0 | 4.01e-8 |
| Atauschii_AET5Gv21077700.7 | SwissProt | 2021-04-01 | Q84RR0 | 2.84e-8 |
| Atauschii_AET5Gv21077700.2 | SwissProt | 2021-04-01 | Q84RR0 | 3.19e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
