Atauschii AET5Gv21131500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21131500 [ AET5Gv21131500] |
5D | 544225393 | 544274203 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21131500.13 AET5Gv21131500.13 |
High | No | 512 | OG0016555 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -27.598 AMFE: -0.622 GC content %: 44.336 | |
| Atauschii_AET5Gv21131500.14 AET5Gv21131500.14 |
High | No | 769 | OG0016555 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -28.388 AMFE: -0.626 GC content %: 45.384 | |
| Atauschii_AET5Gv21131500.7 AET5Gv21131500.7 |
High | No | 822 | OG0077787 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -24.550 AMFE: -0.625 GC content %: 39.294 | |
| Atauschii_AET5Gv21131500.9 AET5Gv21131500.9 |
High | No | 1291 | OG0016555 | Get ORF Coding potential... Type: noncoding Potential: -0.906 Folding energies... MFEI: -28.923 AMFE: -0.645 GC content %: 44.849 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
