GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv21146900 [ AET5Gv21146900]	5D	550564020	550576528	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv21146900.23 AET5Gv21146900.23	High	No	467	OG0016556		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -24.540 AMFE: -0.623 GC content %: 39.400
Atauschii_AET5Gv21146900.24 AET5Gv21146900.24	High	No	629	OG0016556		Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -31.113 AMFE: -0.515 GC content %: 60.413
Atauschii_AET5Gv21146900.25 AET5Gv21146900.25	High	No	297	OG0016556		Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -30.000 AMFE: -0.414 GC content %: 72.391

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).