Atauschii AET5Gv21165700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21165700 [ AET5Gv21165700] |
5D | 555501182 | 555507630 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21165700.1 AET5Gv21165700.1 |
High | No | 4680 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -25.665 AMFE: -0.687 GC content %: 37.350 | |
| Atauschii_AET5Gv21165700.10 AET5Gv21165700.10 |
High | No | 2413 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -27.915 AMFE: -0.706 GC content %: 39.536 | |
| Atauschii_AET5Gv21165700.11 AET5Gv21165700.11 |
High | No | 2793 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -27.007 AMFE: -0.695 GC content %: 38.883 | |
| Atauschii_AET5Gv21165700.12 AET5Gv21165700.12 |
High | No | 1061 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -27.314 AMFE: -0.625 GC content %: 43.732 | |
| Atauschii_AET5Gv21165700.13 AET5Gv21165700.13 |
High | No | 2839 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.290 Folding energies... MFEI: -26.936 AMFE: -0.692 GC content %: 38.922 | |
| Atauschii_AET5Gv21165700.14 AET5Gv21165700.14 |
High | No | 1516 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -27.124 AMFE: -0.650 GC content %: 41.755 | |
| Atauschii_AET5Gv21165700.15 AET5Gv21165700.15 |
High | No | 1768 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -27.036 AMFE: -0.658 GC content %: 41.063 | |
| Atauschii_AET5Gv21165700.16 AET5Gv21165700.16 |
High | No | 2556 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -27.703 AMFE: -0.705 GC content %: 39.280 | |
| Atauschii_AET5Gv21165700.17 AET5Gv21165700.17 |
High | No | 2650 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -27.472 AMFE: -0.698 GC content %: 39.358 | |
| Atauschii_AET5Gv21165700.18 AET5Gv21165700.18 |
High | No | 2402 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -27.240 AMFE: -0.693 GC content %: 39.301 | |
| Atauschii_AET5Gv21165700.19 AET5Gv21165700.19 |
High | No | 4005 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -26.097 AMFE: -0.689 GC content %: 37.853 | |
| Atauschii_AET5Gv21165700.2 AET5Gv21165700.2 |
High | No | 2150 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -28.340 AMFE: -0.724 GC content %: 39.163 | |
| Atauschii_AET5Gv21165700.20 AET5Gv21165700.20 |
High | No | 2626 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.281 Folding energies... MFEI: -27.593 AMFE: -0.703 GC content %: 39.261 | |
| Atauschii_AET5Gv21165700.21 AET5Gv21165700.21 |
High | No | 3212 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -26.809 AMFE: -0.695 GC content %: 38.574 | |
| Atauschii_AET5Gv21165700.22 AET5Gv21165700.22 |
High | No | 1837 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -26.854 AMFE: -0.654 GC content %: 41.045 | |
| Atauschii_AET5Gv21165700.23 AET5Gv21165700.23 |
High | No | 2486 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -27.373 AMFE: -0.693 GC content %: 39.501 | |
| Atauschii_AET5Gv21165700.24 AET5Gv21165700.24 |
High | No | 1756 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.321 Folding energies... MFEI: -26.782 AMFE: -0.654 GC content %: 40.945 | |
| Atauschii_AET5Gv21165700.25 AET5Gv21165700.25 |
High | No | 1678 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.372 AMFE: -0.666 GC content %: 41.120 | |
| Atauschii_AET5Gv21165700.26 AET5Gv21165700.26 |
High | No | 2149 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -27.320 AMFE: -0.685 GC content %: 39.879 | |
| Atauschii_AET5Gv21165700.27 AET5Gv21165700.27 |
High | No | 2110 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -26.171 AMFE: -0.654 GC content %: 40.000 | |
| Atauschii_AET5Gv21165700.28 AET5Gv21165700.28 |
High | No | 1439 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.304 Folding energies... MFEI: -26.053 AMFE: -0.638 GC content %: 40.862 | |
| Atauschii_AET5Gv21165700.29 AET5Gv21165700.29 |
High | No | 3066 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -26.722 AMFE: -0.688 GC content %: 38.813 | |
| Atauschii_AET5Gv21165700.3 AET5Gv21165700.3 |
High | No | 4106 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -26.422 AMFE: -0.700 GC content %: 37.725 | |
| Atauschii_AET5Gv21165700.30 AET5Gv21165700.30 |
High | No | 2115 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.095 Folding energies... MFEI: -25.967 AMFE: -0.651 GC content %: 39.905 | |
| Atauschii_AET5Gv21165700.31 AET5Gv21165700.31 |
High | No | 3057 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -26.611 AMFE: -0.686 GC content %: 38.763 | |
| Atauschii_AET5Gv21165700.32 AET5Gv21165700.32 |
High | No | 1699 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.242 Folding energies... MFEI: -26.633 AMFE: -0.651 GC content %: 40.906 | |
| Atauschii_AET5Gv21165700.33 AET5Gv21165700.33 |
High | No | 4221 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -26.437 AMFE: -0.706 GC content %: 37.432 | |
| Atauschii_AET5Gv21165700.34 AET5Gv21165700.34 |
High | No | 1614 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -27.491 AMFE: -0.666 GC content %: 41.264 | |
| Atauschii_AET5Gv21165700.35 AET5Gv21165700.35 |
High | No | 2658 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -26.633 AMFE: -0.691 GC content %: 38.525 | |
| Atauschii_AET5Gv21165700.36 AET5Gv21165700.36 |
High | No | 1072 | OG0025762 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -25.522 AMFE: -0.607 GC content %: 42.071 | |
| Atauschii_AET5Gv21165700.37 AET5Gv21165700.37 |
High | No | 2649 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -26.010 AMFE: -0.684 GC content %: 38.014 | |
| Atauschii_AET5Gv21165700.38 AET5Gv21165700.38 |
High | No | 4170 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -24.873 AMFE: -0.674 GC content %: 36.906 | |
| Atauschii_AET5Gv21165700.39 AET5Gv21165700.39 |
High | No | 1270 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -25.142 AMFE: -0.645 GC content %: 38.976 | |
| Atauschii_AET5Gv21165700.4 AET5Gv21165700.4 |
High | No | 2064 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -28.004 AMFE: -0.718 GC content %: 39.002 | |
| Atauschii_AET5Gv21165700.40 AET5Gv21165700.40 |
High | No | 806 | OG0025762 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -22.916 AMFE: -0.594 GC content %: 38.586 | |
| Atauschii_AET5Gv21165700.41 AET5Gv21165700.41 |
High | No | 2356 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -24.542 AMFE: -0.650 GC content %: 37.733 | |
| Atauschii_AET5Gv21165700.42 AET5Gv21165700.42 |
High | No | 1007 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -24.111 AMFE: -0.601 GC content %: 40.119 | |
| Atauschii_AET5Gv21165700.43 AET5Gv21165700.43 |
High | No | 646 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.413 Folding energies... MFEI: -22.585 AMFE: -0.598 GC content %: 37.771 | |
| Atauschii_AET5Gv21165700.5 AET5Gv21165700.5 |
High | No | 2331 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -27.864 AMFE: -0.710 GC content %: 39.254 | |
| Atauschii_AET5Gv21165700.6 AET5Gv21165700.6 |
High | No | 4309 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -26.391 AMFE: -0.702 GC content %: 37.596 | |
| Atauschii_AET5Gv21165700.7 AET5Gv21165700.7 |
High | No | 2657 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -27.012 AMFE: -0.702 GC content %: 38.502 | |
| Atauschii_AET5Gv21165700.8 AET5Gv21165700.8 |
High | No | 3690 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -26.295 AMFE: -0.697 GC content %: 37.724 | |
| Atauschii_AET5Gv21165700.9 AET5Gv21165700.9 |
High | No | 1995 | OG0000069 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -26.150 AMFE: -0.648 GC content %: 40.351 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
