Atauschii AET5Gv21167400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21167400 [ AET5Gv21167400] |
5D | 555925910 | 555929257 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21167400.1 AET5Gv21167400.1 |
High | No | 1111 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.206 Folding energies... MFEI: -31.233 AMFE: -0.634 GC content %: 49.235 | |
| Atauschii_AET5Gv21167400.10 AET5Gv21167400.10 |
High | No | 3086 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -26.419 AMFE: -0.626 GC content %: 42.223 | |
| Atauschii_AET5Gv21167400.11 AET5Gv21167400.11 |
High | No | 1131 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -30.831 AMFE: -0.617 GC content %: 49.956 | |
| Atauschii_AET5Gv21167400.12 AET5Gv21167400.12 |
High | No | 1107 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -31.355 AMFE: -0.622 GC content %: 50.407 | |
| Atauschii_AET5Gv21167400.13 AET5Gv21167400.13 |
High | No | 1167 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -31.654 AMFE: -0.595 GC content %: 53.213 | |
| Atauschii_AET5Gv21167400.14 AET5Gv21167400.14 |
High | No | 1268 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -30.276 AMFE: -0.583 GC content %: 51.972 | |
| Atauschii_AET5Gv21167400.15 AET5Gv21167400.15 |
High | No | 1624 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -28.701 AMFE: -0.641 GC content %: 44.766 | |
| Atauschii_AET5Gv21167400.16 AET5Gv21167400.16 |
High | No | 1498 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -28.965 AMFE: -0.642 GC content %: 45.127 | |
| Atauschii_AET5Gv21167400.17 AET5Gv21167400.17 |
High | No | 1513 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.271 Folding energies... MFEI: -30.231 AMFE: -0.672 GC content %: 45.010 | |
| Atauschii_AET5Gv21167400.2 AET5Gv21167400.2 |
High | No | 1536 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.273 Folding energies... MFEI: -25.977 AMFE: -0.630 GC content %: 41.211 | |
| Atauschii_AET5Gv21167400.3 AET5Gv21167400.3 |
High | No | 878 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -28.884 AMFE: -0.617 GC content %: 46.811 | |
| Atauschii_AET5Gv21167400.4 AET5Gv21167400.4 |
High | No | 1100 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.067 Folding energies... MFEI: -27.064 AMFE: -0.595 GC content %: 45.455 | |
| Atauschii_AET5Gv21167400.5 AET5Gv21167400.5 |
High | No | 1481 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -26.273 AMFE: -0.631 GC content %: 41.661 | |
| Atauschii_AET5Gv21167400.6 AET5Gv21167400.6 |
High | No | 897 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.104 Folding energies... MFEI: -26.968 AMFE: -0.587 GC content %: 45.931 | |
| Atauschii_AET5Gv21167400.7 AET5Gv21167400.7 |
High | No | 912 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -27.818 AMFE: -0.598 GC content %: 46.491 | |
| Atauschii_AET5Gv21167400.8 AET5Gv21167400.8 |
High | No | 985 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -33.127 AMFE: -0.646 GC content %: 51.269 | |
| Atauschii_AET5Gv21167400.9 AET5Gv21167400.9 |
High | No | 1783 | OG0000699 | Get ORF Coding potential... Type: noncoding Potential: -1.167 Folding energies... MFEI: -29.153 AMFE: -0.651 GC content %: 44.812 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
