Atauschii AET5Gv21167900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21167900 [ AET5Gv21167900] |
5D | 556120237 | 556166209 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21167900.2 AET5Gv21167900.2 |
High | No | 430 | OG0025764 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -29.419 AMFE: -0.620 GC content %: 47.442 | |
| Atauschii_AET5Gv21167900.4 AET5Gv21167900.4 |
High | No | 821 | OG0077853 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -27.771 AMFE: -0.655 GC content %: 42.387 | |
| Atauschii_AET5Gv21167900.5 AET5Gv21167900.5 |
High | No | 523 | OG0025765 | Get ORF Coding potential... Type: noncoding Potential: -1.272 Folding energies... MFEI: -26.807 AMFE: -0.610 GC content %: 43.977 | |
| Atauschii_AET5Gv21167900.7 AET5Gv21167900.7 |
Low | No | 981 | OG0025765 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.062 AMFE: -0.642 GC content %: 45.260 | |
| Atauschii_AET5Gv21167900.8 AET5Gv21167900.8 |
High | No | 454 | OG0025764 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -29.009 AMFE: -0.624 GC content %: 46.476 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv21167900.7 | SwissProt | 2021-04-01 | Q9ZVR7 | 7.89e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
