Atauschii AET5Gv21174700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21174700 [ AET5Gv21174700] |
5D | 557895727 | 557902898 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21174700.12 AET5Gv21174700.12 |
High | No | 729 | OG0010106 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -25.748 AMFE: -0.598 GC content %: 43.073 | |
| Atauschii_AET5Gv21174700.13 AET5Gv21174700.13 |
High | No | 990 | OG0010106 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -29.333 AMFE: -0.638 GC content %: 45.960 | |
| Atauschii_AET5Gv21174700.14 AET5Gv21174700.14 |
High | No | 445 | OG0010106 | Get ORF Coding potential... Type: noncoding Potential: -0.823 Folding energies... MFEI: -28.517 AMFE: -0.567 GC content %: 50.337 | |
| Atauschii_AET5Gv21174700.15 AET5Gv21174700.15 |
High | No | 482 | OG0077862 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -31.162 AMFE: -0.634 GC content %: 49.170 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
