Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv21175600 [ AET5Gv21175600] |
5D | 557977160 | 557982149 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET5Gv21175600.11 AET5Gv21175600.11 |
Low | No | 343 | OG0010107 | Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -28.513 AMFE: -0.652 GC content %: 43.732 | |
Atauschii_AET5Gv21175600.12 AET5Gv21175600.12 |
High | No | 1936 | OG0077866 | Get ORF Coding potential... Type: noncoding Potential: -0.528 Folding energies... MFEI: -26.333 AMFE: -0.649 GC content %: 40.548 | |
Atauschii_AET5Gv21175600.4 AET5Gv21175600.4 |
High | No | 786 | OG0010107 | Get ORF Coding potential... Type: noncoding Potential: -0.534 Folding energies... MFEI: -30.814 AMFE: -0.641 GC content %: 48.092 | |
Atauschii_AET5Gv21175600.5 AET5Gv21175600.5 |
Low | No | 618 | OG0010107 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -32.945 AMFE: -0.634 GC content %: 51.942 | |
Atauschii_AET5Gv21175600.6 AET5Gv21175600.6 |
High | No | 933 | OG0010107 | Get ORF Coding potential... Type: noncoding Potential: -0.642 Folding energies... MFEI: -29.925 AMFE: -0.651 GC content %: 45.981 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET5Gv21175600.11 | SwissProt | 2021-04-01 | P37574 | 7.4e-7 |
Atauschii_AET5Gv21175600.5 | SwissProt | 2021-04-01 | P37574 | 7.41e-4 |