Atauschii AET5Gv21178000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21178000 [ AET5Gv21178000] |
5D | 558780850 | 558788451 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21178000.14 AET5Gv21178000.14 |
High | No | 1257 | OG0077871 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -22.124 AMFE: -0.589 GC content %: 37.550 | |
| Atauschii_AET5Gv21178000.15 AET5Gv21178000.15 |
Low | No | 1388 | OG0016563 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -24.460 AMFE: -0.632 GC content %: 38.689 | |
| Atauschii_AET5Gv21178000.16 AET5Gv21178000.16 |
Low | No | 1062 | OG0016563 | Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -26.733 AMFE: -0.645 GC content %: 41.431 | |
| Atauschii_AET5Gv21178000.19 AET5Gv21178000.19 |
Low | No | 732 | OG0016563 | Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -25.150 AMFE: -0.635 GC content %: 39.617 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv21178000.15 | SwissProt | 2021-04-01 | Q8C0R7 | 1.71e-5 |
| Atauschii_AET5Gv21178000.16 | SwissProt | 2021-04-01 | Q8C0R7 | 4.29e-5 |
| Atauschii_AET5Gv21178000.19 | SwissProt | 2021-04-01 | Q8C0R7 | 4.67e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
