Atauschii AET5Gv21193700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21193700 [ AET5Gv21193700] |
5D | 562560061 | 562573907 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21193700.1 AET5Gv21193700.1 |
High | No | 375 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -39.493 AMFE: -0.622 GC content %: 63.467 | |
| Atauschii_AET5Gv21193700.2 AET5Gv21193700.2 |
High | No | 327 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -36.514 AMFE: -0.582 GC content %: 62.691 | |
| Atauschii_AET5Gv21193700.3 AET5Gv21193700.3 |
High | No | 1231 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -35.670 AMFE: -0.651 GC content %: 54.833 | |
| Atauschii_AET5Gv21193700.4 AET5Gv21193700.4 |
High | No | 871 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -34.661 AMFE: -0.658 GC content %: 52.698 | |
| Atauschii_AET5Gv21193700.5 AET5Gv21193700.5 |
High | No | 910 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -38.088 AMFE: -0.674 GC content %: 56.484 | |
| Atauschii_AET5Gv21193700.6 AET5Gv21193700.6 |
High | No | 284 | OG0001920 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -35.880 AMFE: -0.576 GC content %: 62.324 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
