GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET5Gv21207300 [ AET5Gv21207300]	5D	566242469	566245422	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET5Gv21207300.4 AET5Gv21207300.4	High	No	661	OG0025774		Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -32.663 AMFE: -0.564 GC content %: 57.943
Atauschii_AET5Gv21207300.5 AET5Gv21207300.5	High	No	408	OG0025774		Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -28.456 AMFE: -0.602 GC content %: 47.304
Atauschii_AET5Gv21207300.6 AET5Gv21207300.6	High	No	693	OG0025775		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -28.745 AMFE: -0.558 GC content %: 51.515

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).