Atauschii AET5Gv21218600
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21218600 [ AET5Gv21218600] |
5D | 569421510 | 569479483 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET5Gv21218600.1 AET5Gv21218600.1 |
High | No | 580 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.825 Folding energies... MFEI: -29.241 AMFE: -0.638 GC content %: 45.862 | |
| Atauschii_AET5Gv21218600.10 AET5Gv21218600.10 |
High | No | 625 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -31.504 AMFE: -0.595 GC content %: 52.960 | |
| Atauschii_AET5Gv21218600.11 AET5Gv21218600.11 |
High | No | 296 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -29.426 AMFE: -0.534 GC content %: 55.068 | |
| Atauschii_AET5Gv21218600.12 AET5Gv21218600.12 |
High | No | 583 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.525 Folding energies... MFEI: -29.108 AMFE: -0.619 GC content %: 46.998 | |
| Atauschii_AET5Gv21218600.13 AET5Gv21218600.13 |
Low | No | 646 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -28.359 AMFE: -0.615 GC content %: 46.130 | |
| Atauschii_AET5Gv21218600.2 AET5Gv21218600.2 |
Low | No | 453 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.452 Folding energies... MFEI: -25.938 AMFE: -0.609 GC content %: 42.605 | |
| Atauschii_AET5Gv21218600.3 AET5Gv21218600.3 |
High | No | 795 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -30.415 AMFE: -0.670 GC content %: 45.409 | |
| Atauschii_AET5Gv21218600.6 AET5Gv21218600.6 |
Low | No | 693 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.379 Folding energies... MFEI: -28.947 AMFE: -0.588 GC content %: 49.206 | |
| Atauschii_AET5Gv21218600.7 AET5Gv21218600.7 |
High | No | 738 | OG0002396 | Get ORF Coding potential... Type: noncoding Potential: -0.466 Folding energies... MFEI: -30.420 AMFE: -0.600 GC content %: 50.678 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET5Gv21218600.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv21218600.13 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Atauschii_AET5Gv21218600.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
