GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20046800 [ AET6Gv20046800]	6D	8605843	8610073	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20046800.4 AET6Gv20046800.4	High	No	692	OG0016552		Get ORF Coding potential... Type: noncoding Potential: -0.600 Folding energies... MFEI: -25.708 AMFE: -0.616 GC content %: 41.763
Atauschii_AET6Gv20046800.5 AET6Gv20046800.5	High	No	1558	OG0016552		Get ORF Coding potential... Type: noncoding Potential: -1.031 Folding energies... MFEI: -25.693 AMFE: -0.668 GC content %: 38.447
Atauschii_AET6Gv20046800.6 AET6Gv20046800.6	High	No	1069	OG0078050		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -22.329 AMFE: -0.612 GC content %: 36.483

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).