Atauschii AET6Gv20082900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20082900 [ AET6Gv20082900] |
6D | 17130433 | 17143364 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20082900.1 AET6Gv20082900.1 |
Low | No | 2789 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -26.085 AMFE: -0.615 GC content %: 42.417 | |
| Atauschii_AET6Gv20082900.10 AET6Gv20082900.10 |
Low | No | 2580 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -26.391 AMFE: -0.612 GC content %: 43.140 | |
| Atauschii_AET6Gv20082900.11 AET6Gv20082900.11 |
Low | No | 2603 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -26.350 AMFE: -0.613 GC content %: 42.989 | |
| Atauschii_AET6Gv20082900.12 AET6Gv20082900.12 |
Low | No | 2680 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -26.037 AMFE: -0.609 GC content %: 42.724 | |
| Atauschii_AET6Gv20082900.13 AET6Gv20082900.13 |
Low | No | 2759 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -26.343 AMFE: -0.621 GC content %: 42.407 | |
| Atauschii_AET6Gv20082900.14 AET6Gv20082900.14 |
Low | No | 1340 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -28.037 AMFE: -0.661 GC content %: 42.388 | |
| Atauschii_AET6Gv20082900.15 AET6Gv20082900.15 |
Low | No | 2109 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.301 Folding energies... MFEI: -24.637 AMFE: -0.651 GC content %: 37.838 | |
| Atauschii_AET6Gv20082900.16 AET6Gv20082900.16 |
Low | No | 2132 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -24.648 AMFE: -0.654 GC content %: 37.711 | |
| Atauschii_AET6Gv20082900.17 AET6Gv20082900.17 |
Low | No | 1548 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -25.078 AMFE: -0.645 GC content %: 38.889 | |
| Atauschii_AET6Gv20082900.18 AET6Gv20082900.18 |
Low | No | 1646 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -24.392 AMFE: -0.634 GC content %: 38.457 | |
| Atauschii_AET6Gv20082900.19 AET6Gv20082900.19 |
Low | No | 2160 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -23.426 AMFE: -0.645 GC content %: 36.296 | |
| Atauschii_AET6Gv20082900.2 AET6Gv20082900.2 |
Low | No | 2281 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -28.654 AMFE: -0.616 GC content %: 46.515 | |
| Atauschii_AET6Gv20082900.20 AET6Gv20082900.20 |
Low | No | 1548 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -26.363 AMFE: -0.654 GC content %: 40.310 | |
| Atauschii_AET6Gv20082900.21 AET6Gv20082900.21 |
High | No | 425 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.428 Folding energies... MFEI: -25.647 AMFE: -0.606 GC content %: 42.353 | |
| Atauschii_AET6Gv20082900.3 AET6Gv20082900.3 |
Low | No | 2858 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -25.868 AMFE: -0.614 GC content %: 42.127 | |
| Atauschii_AET6Gv20082900.4 AET6Gv20082900.4 |
Low | No | 1329 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.270 Folding energies... MFEI: -32.024 AMFE: -0.609 GC content %: 52.596 | |
| Atauschii_AET6Gv20082900.5 AET6Gv20082900.5 |
Low | No | 1506 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -30.558 AMFE: -0.610 GC content %: 50.133 | |
| Atauschii_AET6Gv20082900.6 AET6Gv20082900.6 |
Low | No | 2362 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -27.273 AMFE: -0.611 GC content %: 44.666 | |
| Atauschii_AET6Gv20082900.7 AET6Gv20082900.7 |
Low | No | 3632 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -25.584 AMFE: -0.623 GC content %: 41.052 | |
| Atauschii_AET6Gv20082900.8 AET6Gv20082900.8 |
Low | No | 2291 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -29.092 AMFE: -0.628 GC content %: 46.312 | |
| Atauschii_AET6Gv20082900.9 AET6Gv20082900.9 |
Low | No | 2268 | OG0000449 | Get ORF Coding potential... Type: noncoding Potential: -1.309 Folding energies... MFEI: -29.268 AMFE: -0.629 GC content %: 46.517 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20082900.15 | SwissProt | 2021-04-01 | O48832 | 8.72e-7 |
| Atauschii_AET6Gv20082900.10 | SwissProt | 2021-04-01 | O48832 | 9.9e-7 |
| Atauschii_AET6Gv20082900.7 | SwissProt | 2021-04-01 | O48832 | 1.76e-6 |
| Atauschii_AET6Gv20082900.20 | SwissProt | 2021-04-01 | O48832 | 1.02e-6 |
| Atauschii_AET6Gv20082900.16 | SwissProt | 2021-04-01 | O48832 | 8.86e-7 |
| Atauschii_AET6Gv20082900.11 | SwissProt | 2021-04-01 | O48832 | 1.0e-6 |
| Atauschii_AET6Gv20082900.8 | SwissProt | 2021-04-01 | O48832 | 1.83e-6 |
| Atauschii_AET6Gv20082900.3 | SwissProt | 2021-04-01 | O48832 | 1.31e-6 |
| Atauschii_AET6Gv20082900.17 | SwissProt | 2021-04-01 | O48832 | 4.69e-7 |
| Atauschii_AET6Gv20082900.12 | SwissProt | 2021-04-01 | O48832 | 1.04e-6 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
