Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20111200 [ AET6Gv20111200] |
6D | 24567762 | 24574866 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20111200.14 AET6Gv20111200.14 |
High | No | 922 | OG0004798 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -26.247 AMFE: -0.610 GC content %: 43.059 | |
Atauschii_AET6Gv20111200.15 AET6Gv20111200.15 |
High | No | 475 | OG0004798 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -23.684 AMFE: -0.595 GC content %: 39.789 | |
Atauschii_AET6Gv20111200.7 AET6Gv20111200.7 |
Low | No | 1334 | OG0004798 | Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -25.337 AMFE: -0.618 GC content %: 41.004 | |
Atauschii_AET6Gv20111200.8 AET6Gv20111200.8 |
High | No | 1479 | OG0004798 | Get ORF Coding potential... Type: noncoding Potential: -0.297 Folding energies... MFEI: -26.822 AMFE: -0.637 GC content %: 42.123 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20111200.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |