GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20129700 [ AET6Gv20129700]	6D	28485649	28490516	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20129700.1 AET6Gv20129700.1	High	No	490	OG0025817		Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -21.776 AMFE: -0.499 GC content %: 43.673
Atauschii_AET6Gv20129700.2 AET6Gv20129700.2	High	No	467	OG0025817		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -21.478 AMFE: -0.499 GC content %: 43.041
Atauschii_AET6Gv20129700.3 AET6Gv20129700.3	High	No	496	OG0004799		Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -24.698 AMFE: -0.575 GC content %: 42.944

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).