GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20149600 [ AET6Gv20149600]	6D	33783818	33799163	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20149600.1 AET6Gv20149600.1	High	No	1153	OG0025826		Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -28.257 AMFE: -0.622 GC content %: 45.447
Atauschii_AET6Gv20149600.11 AET6Gv20149600.11	High	No	937	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -24.365 AMFE: -0.617 GC content %: 39.488
Atauschii_AET6Gv20149600.13 AET6Gv20149600.13	High	No	1807	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -25.058 AMFE: -0.614 GC content %: 40.841
Atauschii_AET6Gv20149600.15 AET6Gv20149600.15	High	No	1412	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -25.935 AMFE: -0.657 GC content %: 39.448
Atauschii_AET6Gv20149600.17 AET6Gv20149600.17	Low	No	1083	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -23.943 AMFE: -0.532 GC content %: 44.968
Atauschii_AET6Gv20149600.3 AET6Gv20149600.3	High	No	1179	OG0025826		Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -27.651 AMFE: -0.612 GC content %: 45.208
Atauschii_AET6Gv20149600.7 AET6Gv20149600.7	High	No	927	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -23.409 AMFE: -0.601 GC content %: 38.943
Atauschii_AET6Gv20149600.9 AET6Gv20149600.9	High	No	817	OG0004800		Get ORF Coding potential... Type: noncoding Potential: -0.822 Folding energies... MFEI: -21.958 AMFE: -0.579 GC content %: 37.944

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET6Gv20149600.17	SwissProt	2021-04-01	Q9LRR5	7.38e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).