GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20154900 [ AET6Gv20154900]	6D	35905502	35910334	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20154900.29 AET6Gv20154900.29	High	No	817	OG0078224		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -26.169 AMFE: -0.599 GC content %: 43.696
Atauschii_AET6Gv20154900.30 AET6Gv20154900.30	High	No	3149	OG0025828		Get ORF Coding potential... Type: noncoding Potential: -1.175 Folding energies... MFEI: -26.589 AMFE: -0.689 GC content %: 38.615
Atauschii_AET6Gv20154900.32 AET6Gv20154900.32	High	No	1534	OG0025828		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -28.950 AMFE: -0.687 GC content %: 42.112

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).