GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20161800 [ AET6Gv20161800]	6D	38242580	38243643	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20161800.1 AET6Gv20161800.1	High	No	1064	OG0078239		Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -32.867 AMFE: -0.640 GC content %: 51.316
Atauschii_AET6Gv20161800.2 AET6Gv20161800.2	High	No	270	OG0002946		Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -42.630 AMFE: -0.689 GC content %: 61.852

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).