Atauschii AET6Gv20205500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20205500 [ AET6Gv20205500] |
6D | 54804896 | 54808479 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20205500.14 AET6Gv20205500.14 |
Low | No | 1163 | OG0004802 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -25.340 AMFE: -0.591 GC content %: 42.906 | |
| Atauschii_AET6Gv20205500.4 AET6Gv20205500.4 |
Low | No | 2303 | OG0004802 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -26.661 AMFE: -0.612 GC content %: 43.552 | |
| Atauschii_AET6Gv20205500.6 AET6Gv20205500.6 |
Low | No | 1699 | OG0004802 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -24.544 AMFE: -0.622 GC content %: 39.435 | |
| Atauschii_AET6Gv20205500.7 AET6Gv20205500.7 |
Low | No | 2424 | OG0004802 | Get ORF Coding potential... Type: noncoding Potential: -0.061 Folding energies... MFEI: -26.502 AMFE: -0.626 GC content %: 42.327 | |
| Atauschii_AET6Gv20205500.8 AET6Gv20205500.8 |
Low | No | 2024 | OG0025842 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -25.573 AMFE: -0.633 GC content %: 40.415 | |
| Atauschii_AET6Gv20205500.9 AET6Gv20205500.9 |
Low | No | 2090 | OG0004802 | Get ORF Coding potential... Type: noncoding Potential: -0.188 Folding energies... MFEI: -25.962 AMFE: -0.632 GC content %: 41.053 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20205500.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20205500.4 | SwissProt | 2021-04-01 | Q8LPQ5 | 1.81e-20 |
| Atauschii_AET6Gv20205500.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20205500.6 | SwissProt | 2021-04-01 | Q9ZPW2 | 5.94e-9 |
| Atauschii_AET6Gv20205500.7 | SwissProt | 2021-04-01 | Q8LPQ5 | 2.03e-20 |
| Atauschii_AET6Gv20205500.8 | SwissProt | 2021-04-01 | Q9ZPW2 | 4.78e-9 |
| Atauschii_AET6Gv20205500.9 | SwissProt | 2021-04-01 | Q8LPQ5 | 6.59e-19 |
| Atauschii_AET6Gv20205500.14 | SwissProt | 2021-04-01 | Q9ZPW2 | 3.54e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
