Atauschii AET6Gv20223700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20223700 [ AET6Gv20223700] |
6D | 62349913 | 62364040 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20223700.10 AET6Gv20223700.10 |
High | No | 2062 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -31.566 AMFE: -0.655 GC content %: 48.157 | |
| Atauschii_AET6Gv20223700.11 AET6Gv20223700.11 |
High | No | 2345 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.227 Folding energies... MFEI: -24.857 AMFE: -0.609 GC content %: 40.810 | |
| Atauschii_AET6Gv20223700.12 AET6Gv20223700.12 |
High | No | 1655 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.187 Folding energies... MFEI: -26.991 AMFE: -0.618 GC content %: 43.686 | |
| Atauschii_AET6Gv20223700.13 AET6Gv20223700.13 |
High | No | 914 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -23.468 AMFE: -0.566 GC content %: 41.466 | |
| Atauschii_AET6Gv20223700.14 AET6Gv20223700.14 |
High | No | 1449 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -24.976 AMFE: -0.613 GC content %: 40.718 | |
| Atauschii_AET6Gv20223700.15 AET6Gv20223700.15 |
High | No | 1783 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -23.965 AMFE: -0.608 GC content %: 39.428 | |
| Atauschii_AET6Gv20223700.16 AET6Gv20223700.16 |
High | No | 955 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.097 Folding energies... MFEI: -26.995 AMFE: -0.626 GC content %: 43.141 | |
| Atauschii_AET6Gv20223700.17 AET6Gv20223700.17 |
High | No | 832 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -19.267 AMFE: -0.538 GC content %: 35.817 | |
| Atauschii_AET6Gv20223700.5 AET6Gv20223700.5 |
High | No | 297 | OG0078332 | Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -33.670 AMFE: -0.621 GC content %: 54.209 | |
| Atauschii_AET6Gv20223700.7 AET6Gv20223700.7 |
High | No | 2055 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -31.562 AMFE: -0.653 GC content %: 48.370 | |
| Atauschii_AET6Gv20223700.8 AET6Gv20223700.8 |
High | No | 2051 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -31.370 AMFE: -0.649 GC content %: 48.367 | |
| Atauschii_AET6Gv20223700.9 AET6Gv20223700.9 |
High | No | 2012 | OG0001589 | Get ORF Coding potential... Type: noncoding Potential: -1.215 Folding energies... MFEI: -31.779 AMFE: -0.654 GC content %: 48.608 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
