Atauschii AET6Gv20235000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20235000 [ AET6Gv20235000] |
6D | 67414831 | 67418870 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20235000.17 AET6Gv20235000.17 |
Low | No | 2483 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -25.993 AMFE: -0.640 GC content %: 40.596 | |
| Atauschii_AET6Gv20235000.18 AET6Gv20235000.18 |
Low | No | 1581 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -27.103 AMFE: -0.645 GC content %: 41.999 | |
| Atauschii_AET6Gv20235000.19 AET6Gv20235000.19 |
Low | No | 2579 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.180 Folding energies... MFEI: -24.940 AMFE: -0.636 GC content %: 39.201 | |
| Atauschii_AET6Gv20235000.20 AET6Gv20235000.20 |
Low | No | 1533 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -28.030 AMFE: -0.644 GC content %: 43.509 | |
| Atauschii_AET6Gv20235000.21 AET6Gv20235000.21 |
Low | No | 1444 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -26.205 AMFE: -0.634 GC content %: 41.343 | |
| Atauschii_AET6Gv20235000.22 AET6Gv20235000.22 |
Low | No | 1291 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -27.165 AMFE: -0.615 GC content %: 44.152 | |
| Atauschii_AET6Gv20235000.24 AET6Gv20235000.24 |
Low | No | 1986 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.685 Folding energies... MFEI: -26.299 AMFE: -0.654 GC content %: 40.232 | |
| Atauschii_AET6Gv20235000.25 AET6Gv20235000.25 |
Low | No | 2336 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -25.676 AMFE: -0.639 GC content %: 40.154 | |
| Atauschii_AET6Gv20235000.27 AET6Gv20235000.27 |
Low | No | 3488 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -25.292 AMFE: -0.650 GC content %: 38.933 | |
| Atauschii_AET6Gv20235000.28 AET6Gv20235000.28 |
Low | No | 1994 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -25.958 AMFE: -0.641 GC content %: 40.522 | |
| Atauschii_AET6Gv20235000.29 AET6Gv20235000.29 |
Low | No | 1164 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -25.876 AMFE: -0.633 GC content %: 40.893 | |
| Atauschii_AET6Gv20235000.30 AET6Gv20235000.30 |
Low | No | 1106 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -24.168 AMFE: -0.623 GC content %: 38.788 | |
| Atauschii_AET6Gv20235000.31 AET6Gv20235000.31 |
Low | No | 2435 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -23.598 AMFE: -0.638 GC content %: 37.002 | |
| Atauschii_AET6Gv20235000.32 AET6Gv20235000.32 |
Low | No | 2276 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -23.427 AMFE: -0.631 GC content %: 37.127 | |
| Atauschii_AET6Gv20235000.33 AET6Gv20235000.33 |
Low | No | 1762 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -24.217 AMFE: -0.645 GC content %: 37.571 | |
| Atauschii_AET6Gv20235000.34 AET6Gv20235000.34 |
Low | No | 805 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.890 Folding energies... MFEI: -22.907 AMFE: -0.584 GC content %: 39.255 | |
| Atauschii_AET6Gv20235000.35 AET6Gv20235000.35 |
Low | No | 1426 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -25.288 AMFE: -0.636 GC content %: 39.762 | |
| Atauschii_AET6Gv20235000.36 AET6Gv20235000.36 |
Low | No | 1307 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -25.677 AMFE: -0.659 GC content %: 38.944 | |
| Atauschii_AET6Gv20235000.37 AET6Gv20235000.37 |
Low | No | 858 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -23.403 AMFE: -0.620 GC content %: 37.762 | |
| Atauschii_AET6Gv20235000.38 AET6Gv20235000.38 |
Low | No | 959 | OG0000504 | Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -24.338 AMFE: -0.616 GC content %: 39.520 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20235000.19 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.37 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.32 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.20 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.38 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.33 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Atauschii_AET6Gv20235000.34 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
