Atauschii AET6Gv20280300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20280300 [ AET6Gv20280300] |
6D | 84538831 | 84542649 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20280300.1 AET6Gv20280300.1 |
High | No | 2054 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -31.699 AMFE: -0.673 GC content %: 47.128 | |
| Atauschii_AET6Gv20280300.10 AET6Gv20280300.10 |
High | No | 2284 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -31.462 AMFE: -0.670 GC content %: 46.979 | |
| Atauschii_AET6Gv20280300.12 AET6Gv20280300.12 |
High | No | 1784 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.069 Folding energies... MFEI: -34.994 AMFE: -0.671 GC content %: 52.186 | |
| Atauschii_AET6Gv20280300.13 AET6Gv20280300.13 |
High | No | 2036 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -32.760 AMFE: -0.695 GC content %: 47.151 | |
| Atauschii_AET6Gv20280300.14 AET6Gv20280300.14 |
High | No | 1916 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.336 Folding energies... MFEI: -32.114 AMFE: -0.670 GC content %: 47.912 | |
| Atauschii_AET6Gv20280300.15 AET6Gv20280300.15 |
High | No | 1926 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.336 Folding energies... MFEI: -32.627 AMFE: -0.671 GC content %: 48.598 | |
| Atauschii_AET6Gv20280300.16 AET6Gv20280300.16 |
High | No | 1664 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -31.821 AMFE: -0.669 GC content %: 47.596 | |
| Atauschii_AET6Gv20280300.17 AET6Gv20280300.17 |
High | No | 2308 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -31.616 AMFE: -0.671 GC content %: 47.097 | |
| Atauschii_AET6Gv20280300.18 AET6Gv20280300.18 |
High | No | 935 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -26.781 AMFE: -0.620 GC content %: 43.209 | |
| Atauschii_AET6Gv20280300.19 AET6Gv20280300.19 |
High | No | 1713 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.333 Folding energies... MFEI: -29.013 AMFE: -0.646 GC content %: 44.892 | |
| Atauschii_AET6Gv20280300.2 AET6Gv20280300.2 |
High | No | 1898 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -31.928 AMFE: -0.668 GC content %: 47.787 | |
| Atauschii_AET6Gv20280300.20 AET6Gv20280300.20 |
High | No | 1754 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -30.502 AMFE: -0.656 GC content %: 46.522 | |
| Atauschii_AET6Gv20280300.21 AET6Gv20280300.21 |
High | No | 2056 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -32.349 AMFE: -0.672 GC content %: 48.152 | |
| Atauschii_AET6Gv20280300.25 AET6Gv20280300.25 |
High | No | 1842 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.335 Folding energies... MFEI: -32.058 AMFE: -0.666 GC content %: 48.100 | |
| Atauschii_AET6Gv20280300.26 AET6Gv20280300.26 |
High | No | 2155 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -31.063 AMFE: -0.664 GC content %: 46.775 | |
| Atauschii_AET6Gv20280300.27 AET6Gv20280300.27 |
High | No | 2240 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -32.205 AMFE: -0.690 GC content %: 46.652 | |
| Atauschii_AET6Gv20280300.28 AET6Gv20280300.28 |
High | No | 1460 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -31.911 AMFE: -0.665 GC content %: 48.014 | |
| Atauschii_AET6Gv20280300.29 AET6Gv20280300.29 |
High | No | 1478 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -37.118 AMFE: -0.673 GC content %: 55.142 | |
| Atauschii_AET6Gv20280300.3 AET6Gv20280300.3 |
High | No | 2196 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -31.689 AMFE: -0.668 GC content %: 47.404 | |
| Atauschii_AET6Gv20280300.31 AET6Gv20280300.31 |
High | No | 2131 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.286 Folding energies... MFEI: -30.953 AMFE: -0.684 GC content %: 45.284 | |
| Atauschii_AET6Gv20280300.32 AET6Gv20280300.32 |
High | No | 1433 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -29.358 AMFE: -0.654 GC content %: 44.871 | |
| Atauschii_AET6Gv20280300.4 AET6Gv20280300.4 |
High | No | 2119 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.338 Folding energies... MFEI: -31.161 AMFE: -0.667 GC content %: 46.720 | |
| Atauschii_AET6Gv20280300.5 AET6Gv20280300.5 |
High | No | 2417 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.340 Folding energies... MFEI: -31.038 AMFE: -0.667 GC content %: 46.504 | |
| Atauschii_AET6Gv20280300.6 AET6Gv20280300.6 |
High | No | 2263 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.339 Folding energies... MFEI: -30.875 AMFE: -0.667 GC content %: 46.310 | |
| Atauschii_AET6Gv20280300.7 AET6Gv20280300.7 |
High | No | 2035 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -31.464 AMFE: -0.666 GC content %: 47.224 | |
| Atauschii_AET6Gv20280300.8 AET6Gv20280300.8 |
High | No | 2026 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.337 Folding energies... MFEI: -31.535 AMFE: -0.666 GC content %: 47.335 | |
| Atauschii_AET6Gv20280300.9 AET6Gv20280300.9 |
High | No | 1774 | OG0000247 | Get ORF Coding potential... Type: noncoding Potential: -1.334 Folding energies... MFEI: -31.127 AMFE: -0.663 GC content %: 46.956 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
