GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20302300 [ AET6Gv20302300]	6D	94331554	94371221	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20302300.1 AET6Gv20302300.1	High	No	497	OG0004806		Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -23.622 AMFE: -0.526 GC content %: 44.869
Atauschii_AET6Gv20302300.2 AET6Gv20302300.2	High	No	507	OG0078454		Get ORF Coding potential... Type: noncoding Potential: -1.105 Folding energies... MFEI: -23.767 AMFE: -0.526 GC content %: 45.168
Atauschii_AET6Gv20302300.3 AET6Gv20302300.3	High	No	473	OG0078455		Get ORF Coding potential... Type: noncoding Potential: -1.043 Folding energies... MFEI: -24.672 AMFE: -0.538 GC content %: 45.877

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).