GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20302900 [ AET6Gv20302900]	6D	94483030	94490867	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20302900.1 AET6Gv20302900.1	High	No	340	OG0016602		Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -35.824 AMFE: -0.503 GC content %: 71.176
Atauschii_AET6Gv20302900.4 AET6Gv20302900.4	High	No	564	OG0016602		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -41.454 AMFE: -0.623 GC content %: 66.489
Atauschii_AET6Gv20302900.5 AET6Gv20302900.5	High	No	562	OG0016602		Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -41.690 AMFE: -0.626 GC content %: 66.548

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).