GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20309800 [ AET6Gv20309800]	6D	99678151	99686734	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20309800.12 AET6Gv20309800.12	High	No	661	OG0025868		Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -23.691 AMFE: -0.565 GC content %: 41.906
Atauschii_AET6Gv20309800.13 AET6Gv20309800.13	High	No	674	OG0025868		Get ORF Coding potential... Type: noncoding Potential: -0.422 Folding energies... MFEI: -22.893 AMFE: -0.555 GC content %: 41.246
Atauschii_AET6Gv20309800.16 AET6Gv20309800.16	High	No	732	OG0078474		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -25.874 AMFE: -0.585 GC content %: 44.262

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).