Atauschii AET6Gv20319500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20319500 [ AET6Gv20319500] |
6D | 104057210 | 104079721 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20319500.1 AET6Gv20319500.1 |
High | No | 2156 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -31.336 AMFE: -0.657 GC content %: 47.727 | |
| Atauschii_AET6Gv20319500.10 AET6Gv20319500.10 |
High | No | 2997 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -28.685 AMFE: -0.644 GC content %: 44.545 | |
| Atauschii_AET6Gv20319500.11 AET6Gv20319500.11 |
High | No | 3451 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -28.215 AMFE: -0.649 GC content %: 43.495 | |
| Atauschii_AET6Gv20319500.12 AET6Gv20319500.12 |
High | No | 408 | OG0078484 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -35.931 AMFE: -0.660 GC content %: 54.412 | |
| Atauschii_AET6Gv20319500.13 AET6Gv20319500.13 |
High | No | 1010 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -34.624 AMFE: -0.651 GC content %: 53.168 | |
| Atauschii_AET6Gv20319500.15 AET6Gv20319500.15 |
High | No | 2808 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -29.697 AMFE: -0.649 GC content %: 45.726 | |
| Atauschii_AET6Gv20319500.2 AET6Gv20319500.2 |
High | No | 2243 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.820 AMFE: -0.649 GC content %: 47.481 | |
| Atauschii_AET6Gv20319500.21 AET6Gv20319500.21 |
High | No | 1818 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -30.468 AMFE: -0.638 GC content %: 47.745 | |
| Atauschii_AET6Gv20319500.22 AET6Gv20319500.22 |
High | No | 1098 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -26.885 AMFE: -0.624 GC content %: 43.078 | |
| Atauschii_AET6Gv20319500.23 AET6Gv20319500.23 |
Low | No | 1946 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -28.746 AMFE: -0.635 GC content %: 45.272 | |
| Atauschii_AET6Gv20319500.24 AET6Gv20319500.24 |
High | No | 416 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -24.159 AMFE: -0.518 GC content %: 46.635 | |
| Atauschii_AET6Gv20319500.25 AET6Gv20319500.25 |
High | No | 1366 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -29.861 AMFE: -0.641 GC content %: 46.559 | |
| Atauschii_AET6Gv20319500.26 AET6Gv20319500.26 |
High | No | 2181 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -27.652 AMFE: -0.658 GC content %: 42.045 | |
| Atauschii_AET6Gv20319500.27 AET6Gv20319500.27 |
High | No | 1791 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.169 Folding energies... MFEI: -28.950 AMFE: -0.663 GC content %: 43.663 | |
| Atauschii_AET6Gv20319500.28 AET6Gv20319500.28 |
High | No | 870 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -30.552 AMFE: -0.636 GC content %: 48.046 | |
| Atauschii_AET6Gv20319500.29 AET6Gv20319500.29 |
High | No | 1274 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -27.418 AMFE: -0.620 GC content %: 44.192 | |
| Atauschii_AET6Gv20319500.3 AET6Gv20319500.3 |
Low | No | 3873 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -29.925 AMFE: -0.655 GC content %: 45.701 | |
| Atauschii_AET6Gv20319500.30 AET6Gv20319500.30 |
High | No | 1160 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -26.207 AMFE: -0.617 GC content %: 42.500 | |
| Atauschii_AET6Gv20319500.4 AET6Gv20319500.4 |
High | No | 2233 | OG0000621 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -30.484 AMFE: -0.645 GC content %: 47.246 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20319500.23 | SwissProt | 2021-04-01 | Q7Y0Y8 | 3.13e-4 |
| Atauschii_AET6Gv20319500.3 | SwissProt | 2021-04-01 | Q7Y0Y8 | 1.12e-9 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
