GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20346600 [ AET6Gv20346600]	6D	111403165	111404815	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20346600.1 AET6Gv20346600.1	High	No	906	OG0078522		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -26.567 AMFE: -0.596 GC content %: 44.592
Atauschii_AET6Gv20346600.2 AET6Gv20346600.2	High	No	347	OG0078523		Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -31.012 AMFE: -0.448 GC content %: 69.164
Atauschii_AET6Gv20346600.3 AET6Gv20346600.3	High	No	347	OG0078524		Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -30.605 AMFE: -0.472 GC content %: 64.841

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).