Atauschii AET6Gv20348300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20348300 [ AET6Gv20348300] |
6D | 111710445 | 111713713 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20348300.1 AET6Gv20348300.1 |
High | No | 1930 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -39.938 AMFE: -0.696 GC content %: 57.409 | |
| Atauschii_AET6Gv20348300.2 AET6Gv20348300.2 |
High | No | 1203 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -41.521 AMFE: -0.724 GC content %: 57.357 | |
| Atauschii_AET6Gv20348300.3 AET6Gv20348300.3 |
Low | No | 1353 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -40.251 AMFE: -0.719 GC content %: 55.950 | |
| Atauschii_AET6Gv20348300.4 AET6Gv20348300.4 |
Low | No | 1248 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -34.383 AMFE: -0.684 GC content %: 50.240 | |
| Atauschii_AET6Gv20348300.5 AET6Gv20348300.5 |
Low | No | 947 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -35.987 AMFE: -0.690 GC content %: 52.165 | |
| Atauschii_AET6Gv20348300.7 AET6Gv20348300.7 |
Low | No | 1270 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -27.063 AMFE: -0.664 GC content %: 40.787 | |
| Atauschii_AET6Gv20348300.8 AET6Gv20348300.8 |
Low | No | 998 | OG0003786 | Get ORF Coding potential... Type: noncoding Potential: -0.597 Folding energies... MFEI: -27.735 AMFE: -0.673 GC content %: 41.182 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20348300.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET6Gv20348300.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET6Gv20348300.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET6Gv20348300.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Atauschii_AET6Gv20348300.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
