Atauschii AET6Gv20351000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20351000 [ AET6Gv20351000] |
6D | 113349322 | 113363729 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20351000.1 AET6Gv20351000.1 |
High | No | 849 | OG0010130 | Get ORF Coding potential... Type: noncoding Potential: -1.300 Folding energies... MFEI: -28.634 AMFE: -0.569 GC content %: 50.294 | |
| Atauschii_AET6Gv20351000.2 AET6Gv20351000.2 |
High | No | 710 | OG0010130 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -31.070 AMFE: -0.560 GC content %: 55.493 | |
| Atauschii_AET6Gv20351000.7 AET6Gv20351000.7 |
High | No | 470 | OG0010130 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -22.149 AMFE: -0.551 GC content %: 40.213 | |
| Atauschii_AET6Gv20351000.8 AET6Gv20351000.8 |
High | No | 994 | OG0010130 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -26.097 AMFE: -0.628 GC content %: 41.549 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
