Atauschii AET6Gv20351300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20351300 [ AET6Gv20351300] |
6D | 113394353 | 113444065 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20351300.10 AET6Gv20351300.10 |
High | No | 450 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -23.178 AMFE: -0.603 GC content %: 38.444 | |
| Atauschii_AET6Gv20351300.11 AET6Gv20351300.11 |
High | No | 431 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -1.156 Folding energies... MFEI: -23.434 AMFE: -0.608 GC content %: 38.515 | |
| Atauschii_AET6Gv20351300.18 AET6Gv20351300.18 |
High | No | 1092 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -24.936 AMFE: -0.644 GC content %: 38.736 | |
| Atauschii_AET6Gv20351300.19 AET6Gv20351300.19 |
High | No | 866 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -23.903 AMFE: -0.620 GC content %: 38.568 | |
| Atauschii_AET6Gv20351300.20 AET6Gv20351300.20 |
High | No | 302 | OG0078541 | Get ORF Coding potential... Type: noncoding Potential: -0.427 Folding energies... MFEI: -19.338 AMFE: -0.491 GC content %: 39.404 | |
| Atauschii_AET6Gv20351300.21 AET6Gv20351300.21 |
High | No | 690 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -23.449 AMFE: -0.627 GC content %: 37.391 | |
| Atauschii_AET6Gv20351300.7 AET6Gv20351300.7 |
Low | No | 1046 | OG0003788 | Get ORF Coding potential... Type: coding Potential: 0.274 Folding energies... MFEI: -25.344 AMFE: -0.643 GC content %: 39.388 | |
| Atauschii_AET6Gv20351300.8 AET6Gv20351300.8 |
Low | No | 1082 | OG0078542 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -23.152 AMFE: -0.661 GC content %: 35.028 | |
| Atauschii_AET6Gv20351300.9 AET6Gv20351300.9 |
High | No | 827 | OG0003788 | Get ORF Coding potential... Type: noncoding Potential: -0.353 Folding energies... MFEI: -23.712 AMFE: -0.621 GC content %: 38.210 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20351300.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
