GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20357700 [ AET6Gv20357700]	6D	117577251	117585282	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20357700.10 AET6Gv20357700.10	High	No	1972	OG0025881		Get ORF Coding potential... Type: noncoding Potential: -1.264 Folding energies... MFEI: -26.171 AMFE: -0.591 GC content %: 44.320
Atauschii_AET6Gv20357700.22 AET6Gv20357700.22	High	No	782	OG0078572		Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -27.583 AMFE: -0.640 GC content %: 43.095
Atauschii_AET6Gv20357700.4 AET6Gv20357700.4	High	No	2443	OG0025881		Get ORF Coding potential... Type: noncoding Potential: -1.279 Folding energies... MFEI: -30.970 AMFE: -0.647 GC content %: 47.892

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).