GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20364900 [ AET6Gv20364900]	6D	121365088	121379895	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20364900.13 AET6Gv20364900.13	High	No	646	OG0007043		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -30.666 AMFE: -0.617 GC content %: 49.690
Atauschii_AET6Gv20364900.14 AET6Gv20364900.14	High	No	345	OG0007043		Get ORF Coding potential... Type: noncoding Potential: -1.326 Folding energies... MFEI: -26.986 AMFE: -0.571 GC content %: 47.246

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).