GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20369400 [ AET6Gv20369400]	6D	123537198	123539493	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20369400.1 AET6Gv20369400.1	Low	Yes	1598	OG0016609		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -31.214 AMFE: -0.644 GC content %: 48.498
Atauschii_AET6Gv20369400.2 AET6Gv20369400.2	High	No	307	OG0078590		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -24.007 AMFE: -0.563 GC content %: 42.671

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Atauschii_AET6Gv20369400.1	Rfam	14.6	MIR1122	1.4e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).