GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20393800 [ AET6Gv20393800]	6D	138176233	138178278	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20393800.1 AET6Gv20393800.1	High	No	813	OG0016614		Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -32.116 AMFE: -0.599 GC content %: 53.629
Atauschii_AET6Gv20393800.2 AET6Gv20393800.2	High	No	666	OG0016614		Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -32.883 AMFE: -0.578 GC content %: 56.907
Atauschii_AET6Gv20393800.3 AET6Gv20393800.3	High	No	286	OG0007044		Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -39.825 AMFE: -0.609 GC content %: 65.385

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).