Atauschii AET6Gv20401300
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20401300 [ AET6Gv20401300] |
6D | 143904554 | 143909573 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20401300.1 AET6Gv20401300.1 |
High | No | 734 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.234 Folding energies... MFEI: -25.872 AMFE: -0.673 GC content %: 38.420 | |
| Atauschii_AET6Gv20401300.10 AET6Gv20401300.10 |
Low | No | 1621 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -30.722 AMFE: -0.714 GC content %: 42.998 | |
| Atauschii_AET6Gv20401300.11 AET6Gv20401300.11 |
Low | No | 2022 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -29.634 AMFE: -0.686 GC content %: 43.225 | |
| Atauschii_AET6Gv20401300.12 AET6Gv20401300.12 |
Low | No | 1948 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -30.015 AMFE: -0.681 GC content %: 44.045 | |
| Atauschii_AET6Gv20401300.13 AET6Gv20401300.13 |
Low | No | 1229 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -33.735 AMFE: -0.698 GC content %: 48.332 | |
| Atauschii_AET6Gv20401300.16 AET6Gv20401300.16 |
Low | No | 2371 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -29.405 AMFE: -0.697 GC content %: 42.176 | |
| Atauschii_AET6Gv20401300.17 AET6Gv20401300.17 |
Low | No | 2370 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -29.468 AMFE: -0.698 GC content %: 42.194 | |
| Atauschii_AET6Gv20401300.19 AET6Gv20401300.19 |
Low | No | 1877 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.093 Folding energies... MFEI: -30.346 AMFE: -0.681 GC content %: 44.592 | |
| Atauschii_AET6Gv20401300.22 AET6Gv20401300.22 |
Low | No | 1825 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -28.060 AMFE: -0.678 GC content %: 41.370 | |
| Atauschii_AET6Gv20401300.23 AET6Gv20401300.23 |
Low | No | 820 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -23.049 AMFE: -0.628 GC content %: 36.707 | |
| Atauschii_AET6Gv20401300.24 AET6Gv20401300.24 |
High | No | 304 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -38.026 AMFE: -0.612 GC content %: 62.171 | |
| Atauschii_AET6Gv20401300.3 AET6Gv20401300.3 |
Low | No | 2563 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -29.263 AMFE: -0.705 GC content %: 41.514 | |
| Atauschii_AET6Gv20401300.7 AET6Gv20401300.7 |
Low | No | 2441 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -29.615 AMFE: -0.707 GC content %: 41.868 | |
| Atauschii_AET6Gv20401300.8 AET6Gv20401300.8 |
Low | No | 1282 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -33.198 AMFE: -0.693 GC content %: 47.894 | |
| Atauschii_AET6Gv20401300.9 AET6Gv20401300.9 |
Low | No | 1649 | OG0000881 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -30.534 AMFE: -0.691 GC content %: 44.209 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20401300.9 | SwissProt | 2021-04-01 | Q7F0R1 | 2.2e-5 |
| Atauschii_AET6Gv20401300.22 | SwissProt | 2021-04-01 | Q7F0R1 | 1.6e-5 |
| Atauschii_AET6Gv20401300.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20401300.12 | SwissProt | 2021-04-01 | Q7F0R1 | 2.53e-4 |
| Atauschii_AET6Gv20401300.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20401300.10 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20401300.23 | SwissProt | 2021-04-01 | Q7F0R1 | 3.59e-6 |
| Atauschii_AET6Gv20401300.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20401300.13 | SwissProt | 2021-04-01 | Q7F0R1 | 2.8e-4 |
| Atauschii_AET6Gv20401300.19 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
