GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20429900 [ AET6Gv20429900]	6D	161435088	161438228	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20429900.11 AET6Gv20429900.11	High	No	851	OG0025901		Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -28.226 AMFE: -0.692 GC content %: 40.776
Atauschii_AET6Gv20429900.13 AET6Gv20429900.13	High	No	579	OG0025901		Get ORF Coding potential... Type: noncoding Potential: -0.311 Folding energies... MFEI: -26.926 AMFE: -0.652 GC content %: 41.278
Atauschii_AET6Gv20429900.5 AET6Gv20429900.5	High	No	489	OG0078697		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -38.630 AMFE: -0.619 GC content %: 62.372

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).