Atauschii AET6Gv20430400
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20430400 [ AET6Gv20430400] |
6D | 161851189 | 161855866 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20430400.1 AET6Gv20430400.1 |
Low | No | 2163 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -30.074 AMFE: -0.650 GC content %: 46.278 | |
| Atauschii_AET6Gv20430400.10 AET6Gv20430400.10 |
High | No | 1853 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -30.421 AMFE: -0.649 GC content %: 46.897 | |
| Atauschii_AET6Gv20430400.11 AET6Gv20430400.11 |
High | No | 1762 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -30.834 AMFE: -0.646 GC content %: 47.730 | |
| Atauschii_AET6Gv20430400.12 AET6Gv20430400.12 |
High | No | 3385 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -27.176 AMFE: -0.659 GC content %: 41.241 | |
| Atauschii_AET6Gv20430400.13 AET6Gv20430400.13 |
Low | No | 1306 | OG0078699 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -30.391 AMFE: -0.625 GC content %: 48.622 | |
| Atauschii_AET6Gv20430400.14 AET6Gv20430400.14 |
Low | No | 2841 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.059 Folding energies... MFEI: -26.227 AMFE: -0.659 GC content %: 39.810 | |
| Atauschii_AET6Gv20430400.2 AET6Gv20430400.2 |
Low | No | 2204 | OG0003792 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.436 AMFE: -0.649 GC content %: 46.869 | |
| Atauschii_AET6Gv20430400.4 AET6Gv20430400.4 |
High | No | 1546 | OG0010137 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -31.016 AMFE: -0.634 GC content %: 48.900 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20430400.13 | SwissProt | 2021-04-01 | Q9ZVC9 | 7.62e-4 |
| Atauschii_AET6Gv20430400.14 | SwissProt | 2021-04-01 | Q9ZVC9 | 5.37e-4 |
| Atauschii_AET6Gv20430400.2 | SwissProt | 2021-04-01 | Q9ZVC9 | 4.09e-4 |
| Atauschii_AET6Gv20430400.1 | SwissProt | 2021-04-01 | Q9ZVC9 | 4.01e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
