GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Atauschii_AET6Gv20441000 [ AET6Gv20441000]	6D	168000845	168003657	v4	Aegilops tauschii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Atauschii_AET6Gv20441000.2 AET6Gv20441000.2	High	No	787	OG0010139		Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -26.290 AMFE: -0.581 GC content %: 45.235
Atauschii_AET6Gv20441000.3 AET6Gv20441000.3	High	No	933	OG0010139		Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -26.013 AMFE: -0.578 GC content %: 45.016
Atauschii_AET6Gv20441000.4 AET6Gv20441000.4	High	No	628	OG0010139		Get ORF Coding potential... Type: noncoding Potential: -0.349 Folding energies... MFEI: -23.535 AMFE: -0.549 GC content %: 42.834
Atauschii_AET6Gv20441000.5 AET6Gv20441000.5	High	No	438	OG0010139		Get ORF Coding potential... Type: noncoding Potential: -0.373 Folding energies... MFEI: -20.959 AMFE: -0.488 GC content %: 42.922
Atauschii_AET6Gv20441000.7 AET6Gv20441000.7	High	No	388	OG0078720		Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -29.304 AMFE: -0.628 GC content %: 46.649

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).