Atauschii AET6Gv20455000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20455000 [ AET6Gv20455000] |
6D | 179362048 | 179367914 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20455000.12 AET6Gv20455000.12 |
High | No | 338 | OG0078747 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -28.314 AMFE: -0.594 GC content %: 47.633 | |
| Atauschii_AET6Gv20455000.13 AET6Gv20455000.13 |
High | No | 667 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -27.646 AMFE: -0.629 GC content %: 43.928 | |
| Atauschii_AET6Gv20455000.14 AET6Gv20455000.14 |
High | No | 894 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -33.378 AMFE: -0.628 GC content %: 53.132 | |
| Atauschii_AET6Gv20455000.17 AET6Gv20455000.17 |
High | No | 588 | OG0007047 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -32.228 AMFE: -0.634 GC content %: 50.850 | |
| Atauschii_AET6Gv20455000.2 AET6Gv20455000.2 |
High | No | 1896 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -30.079 AMFE: -0.649 GC content %: 46.361 | |
| Atauschii_AET6Gv20455000.20 AET6Gv20455000.20 |
High | No | 341 | OG0007047 | Get ORF Coding potential... Type: noncoding Potential: -0.691 Folding energies... MFEI: -24.135 AMFE: -0.596 GC content %: 40.469 | |
| Atauschii_AET6Gv20455000.21 AET6Gv20455000.21 |
High | No | 339 | OG0007047 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -24.985 AMFE: -0.592 GC content %: 42.183 | |
| Atauschii_AET6Gv20455000.22 AET6Gv20455000.22 |
High | No | 354 | OG0007047 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -31.243 AMFE: -0.604 GC content %: 51.695 | |
| Atauschii_AET6Gv20455000.23 AET6Gv20455000.23 |
High | No | 359 | OG0007047 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -32.312 AMFE: -0.624 GC content %: 51.811 | |
| Atauschii_AET6Gv20455000.3 AET6Gv20455000.3 |
High | No | 2224 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -30.724 AMFE: -0.640 GC content %: 47.977 | |
| Atauschii_AET6Gv20455000.4 AET6Gv20455000.4 |
High | No | 2630 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -29.601 AMFE: -0.639 GC content %: 46.350 | |
| Atauschii_AET6Gv20455000.8 AET6Gv20455000.8 |
High | No | 1569 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -32.033 AMFE: -0.656 GC content %: 48.821 | |
| Atauschii_AET6Gv20455000.9 AET6Gv20455000.9 |
High | No | 1342 | OG0000451 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -32.042 AMFE: -0.636 GC content %: 50.373 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
