Atauschii AET6Gv20466900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20466900 [ AET6Gv20466900] |
6D | 187738532 | 187739953 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20466900.1 AET6Gv20466900.1 |
Low | No | 632 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -30.032 AMFE: -0.622 GC content %: 48.259 | |
| Atauschii_AET6Gv20466900.2 AET6Gv20466900.2 |
Low | No | 683 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -31.698 AMFE: -0.622 GC content %: 50.952 | |
| Atauschii_AET6Gv20466900.3 AET6Gv20466900.3 |
Low | No | 456 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -0.756 Folding energies... MFEI: -28.487 AMFE: -0.580 GC content %: 49.123 | |
| Atauschii_AET6Gv20466900.4 AET6Gv20466900.4 |
Low | No | 444 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -0.767 Folding energies... MFEI: -29.842 AMFE: -0.594 GC content %: 50.225 | |
| Atauschii_AET6Gv20466900.5 AET6Gv20466900.5 |
Low | No | 325 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -1.023 Folding energies... MFEI: -38.123 AMFE: -0.652 GC content %: 58.462 | |
| Atauschii_AET6Gv20466900.6 AET6Gv20466900.6 |
High | No | 231 | OG0078774 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -24.762 AMFE: -0.515 GC content %: 48.052 | |
| Atauschii_AET6Gv20466900.7 AET6Gv20466900.7 |
Low | No | 414 | OG0000787 | Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -36.981 AMFE: -0.630 GC content %: 58.696 | |
| Atauschii_AET6Gv20466900.8 AET6Gv20466900.8 |
High | No | 244 | OG0078775 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -30.713 AMFE: -0.503 GC content %: 61.066 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20466900.5 | SwissProt | 2021-04-01 | E2RKN8 | 6.25e-10 |
| Atauschii_AET6Gv20466900.7 | SwissProt | 2021-04-01 | E2RKN8 | 1.7e-9 |
| Atauschii_AET6Gv20466900.1 | SwissProt | 2021-04-01 | E2RKN8 | 5.51e-7 |
| Atauschii_AET6Gv20466900.1 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia | |
| Atauschii_AET6Gv20466900.2 | SwissProt | 2021-04-01 | E2RKN8 | 2.59e-5 |
| Atauschii_AET6Gv20466900.3 | SwissProt | 2021-04-01 | E2RKN8 | 1.0e-5 |
| Atauschii_AET6Gv20466900.4 | SwissProt | 2021-04-01 | E2RKN8 | 1.35e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
