Atauschii AET6Gv20467900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20467900 [ AET6Gv20467900] |
6D | 188113418 | 188125221 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20467900.1 AET6Gv20467900.1 |
Low | No | 1915 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.201 Folding energies... MFEI: -30.554 AMFE: -0.657 GC content %: 46.527 | |
| Atauschii_AET6Gv20467900.11 AET6Gv20467900.11 |
High | No | 223 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -20.628 AMFE: -0.465 GC content %: 44.395 | |
| Atauschii_AET6Gv20467900.12 AET6Gv20467900.12 |
Low | No | 1243 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -30.990 AMFE: -0.642 GC content %: 48.270 | |
| Atauschii_AET6Gv20467900.22 AET6Gv20467900.22 |
Low | No | 480 | OG0025913 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -27.125 AMFE: -0.641 GC content %: 42.292 | |
| Atauschii_AET6Gv20467900.24 AET6Gv20467900.24 |
Low | No | 787 | OG0025913 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -25.693 AMFE: -0.634 GC content %: 40.534 | |
| Atauschii_AET6Gv20467900.3 AET6Gv20467900.3 |
Low | No | 1248 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.407 Folding energies... MFEI: -28.838 AMFE: -0.639 GC content %: 45.112 | |
| Atauschii_AET6Gv20467900.6 AET6Gv20467900.6 |
Low | No | 1355 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.339 Folding energies... MFEI: -29.292 AMFE: -0.636 GC content %: 46.052 | |
| Atauschii_AET6Gv20467900.7 AET6Gv20467900.7 |
Low | No | 1417 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -28.793 AMFE: -0.626 GC content %: 46.013 | |
| Atauschii_AET6Gv20467900.8 AET6Gv20467900.8 |
Low | No | 1600 | OG0003794 | Get ORF Coding potential... Type: noncoding Potential: -0.467 Folding energies... MFEI: -29.944 AMFE: -0.650 GC content %: 46.062 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20467900.3 | SwissProt | 2021-04-01 | P32260 | 4.36e-11 |
| Atauschii_AET6Gv20467900.6 | SwissProt | 2021-04-01 | P32260 | 5.23e-11 |
| Atauschii_AET6Gv20467900.1 | SwissProt | 2021-04-01 | P32260 | 9.08e-17 |
| Atauschii_AET6Gv20467900.7 | SwissProt | 2021-04-01 | P32260 | 5.71e-11 |
| Atauschii_AET6Gv20467900.12 | SwissProt | 2021-04-01 | P32260 | 4.33e-11 |
| Atauschii_AET6Gv20467900.8 | SwissProt | 2021-04-01 | P32260 | 7.18e-11 |
| Atauschii_AET6Gv20467900.22 | SwissProt | 2021-04-01 | F4K5T2 | 2.28e-6 |
| Atauschii_AET6Gv20467900.24 | SwissProt | 2021-04-01 | F4K5T2 | 4.33e-4 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
