Atauschii AET6Gv20479200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20479200 [ AET6Gv20479200] |
6D | 201269261 | 201275480 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20479200.1 AET6Gv20479200.1 |
High | No | 2408 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -29.174 AMFE: -0.636 GC content %: 45.847 | |
| Atauschii_AET6Gv20479200.10 AET6Gv20479200.10 |
Low | No | 1932 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -29.720 AMFE: -0.637 GC content %: 46.687 | |
| Atauschii_AET6Gv20479200.11 AET6Gv20479200.11 |
Low | No | 3751 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -27.769 AMFE: -0.665 GC content %: 41.749 | |
| Atauschii_AET6Gv20479200.12 AET6Gv20479200.12 |
Low | No | 3519 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -28.315 AMFE: -0.656 GC content %: 43.137 | |
| Atauschii_AET6Gv20479200.13 AET6Gv20479200.13 |
Low | No | 3465 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -27.039 AMFE: -0.660 GC content %: 40.952 | |
| Atauschii_AET6Gv20479200.14 AET6Gv20479200.14 |
Low | No | 3587 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.998 Folding energies... MFEI: -27.254 AMFE: -0.652 GC content %: 41.790 | |
| Atauschii_AET6Gv20479200.15 AET6Gv20479200.15 |
Low | No | 1693 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.895 Folding energies... MFEI: -28.636 AMFE: -0.607 GC content %: 47.194 | |
| Atauschii_AET6Gv20479200.16 AET6Gv20479200.16 |
Low | No | 1446 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -28.873 AMFE: -0.615 GC content %: 46.957 | |
| Atauschii_AET6Gv20479200.18 AET6Gv20479200.18 |
Low | No | 423 | OG0078796 | Get ORF Coding potential... Type: noncoding Potential: -1.225 Folding energies... MFEI: -26.454 AMFE: -0.586 GC content %: 45.154 | |
| Atauschii_AET6Gv20479200.2 AET6Gv20479200.2 |
Low | No | 3821 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -27.535 AMFE: -0.656 GC content %: 41.952 | |
| Atauschii_AET6Gv20479200.20 AET6Gv20479200.20 |
Low | No | 2931 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -24.637 AMFE: -0.666 GC content %: 37.018 | |
| Atauschii_AET6Gv20479200.3 AET6Gv20479200.3 |
Low | No | 4528 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -27.869 AMFE: -0.666 GC content %: 41.851 | |
| Atauschii_AET6Gv20479200.4 AET6Gv20479200.4 |
Low | No | 3024 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.109 Folding energies... MFEI: -27.923 AMFE: -0.650 GC content %: 42.956 | |
| Atauschii_AET6Gv20479200.5 AET6Gv20479200.5 |
Low | No | 3509 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -27.846 AMFE: -0.650 GC content %: 42.833 | |
| Atauschii_AET6Gv20479200.6 AET6Gv20479200.6 |
Low | No | 3376 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -27.903 AMFE: -0.661 GC content %: 42.210 | |
| Atauschii_AET6Gv20479200.7 AET6Gv20479200.7 |
Low | No | 1992 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.082 Folding energies... MFEI: -29.990 AMFE: -0.634 GC content %: 47.339 | |
| Atauschii_AET6Gv20479200.8 AET6Gv20479200.8 |
Low | No | 2654 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -29.002 AMFE: -0.642 GC content %: 45.177 | |
| Atauschii_AET6Gv20479200.9 AET6Gv20479200.9 |
Low | No | 3960 | OG0000701 | Get ORF Coding potential... Type: noncoding Potential: -1.122 Folding energies... MFEI: -27.457 AMFE: -0.669 GC content %: 41.061 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20479200.14 | SwissProt | 2021-04-01 | Q9C8M1 | 2.62e-9 |
| Atauschii_AET6Gv20479200.8 | SwissProt | 2021-04-01 | Q3B724 | 4.53e-8 |
| Atauschii_AET6Gv20479200.3 | SwissProt | 2021-04-01 | Q9C8M1 | 3.45e-9 |
| Atauschii_AET6Gv20479200.15 | SwissProt | 2021-04-01 | Q3B724 | 2.73e-8 |
| Atauschii_AET6Gv20479200.10 | SwissProt | 2021-04-01 | Q3B724 | 3.19e-8 |
| Atauschii_AET6Gv20479200.9 | SwissProt | 2021-04-01 | Q9C8M1 | 2.95e-9 |
| Atauschii_AET6Gv20479200.4 | SwissProt | 2021-04-01 | Q3B724 | 5.21e-8 |
| Atauschii_AET6Gv20479200.16 | SwissProt | 2021-04-01 | Q3B724 | 2.24e-8 |
| Atauschii_AET6Gv20479200.11 | SwissProt | 2021-04-01 | Q9C8M1 | 2.77e-9 |
| Atauschii_AET6Gv20479200.5 | SwissProt | 2021-04-01 | Q3B724 | 6.11e-8 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
