Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20487600 [ AET6Gv20487600] |
6D | 216579957 | 216590239 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20487600.10 AET6Gv20487600.10 |
High | No | 463 | OG0078803 | Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -24.968 AMFE: -0.615 GC content %: 40.605 | |
Atauschii_AET6Gv20487600.5 AET6Gv20487600.5 |
Low | No | 936 | OG0016629 | Get ORF Coding potential... Type: noncoding Potential: -0.501 Folding energies... MFEI: -29.124 AMFE: -0.635 GC content %: 45.833 | |
Atauschii_AET6Gv20487600.6 AET6Gv20487600.6 |
Low | No | 723 | OG0016629 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -25.021 AMFE: -0.617 GC content %: 40.526 | |
Atauschii_AET6Gv20487600.9 AET6Gv20487600.9 |
High | No | 659 | OG0016629 | Get ORF Coding potential... Type: noncoding Potential: -0.619 Folding energies... MFEI: -28.194 AMFE: -0.628 GC content %: 44.917 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20487600.6 | SwissProt | 2021-04-01 | Q56XP9 | 7.88e-11 |
Atauschii_AET6Gv20487600.5 | SwissProt | 2021-04-01 | Q56XP9 | 1.22e-10 |