Atauschii AET6Gv20530500
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20530500 [ AET6Gv20530500] |
6D | 264321397 | 264323223 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20530500.1 AET6Gv20530500.1 |
High | No | 1814 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -31.825 AMFE: -0.605 GC content %: 52.591 | |
| Atauschii_AET6Gv20530500.2 AET6Gv20530500.2 |
High | No | 1157 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -32.593 AMFE: -0.584 GC content %: 55.834 | |
| Atauschii_AET6Gv20530500.3 AET6Gv20530500.3 |
High | No | 1180 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -32.992 AMFE: -0.576 GC content %: 57.288 | |
| Atauschii_AET6Gv20530500.4 AET6Gv20530500.4 |
High | No | 784 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -0.678 Folding energies... MFEI: -32.296 AMFE: -0.574 GC content %: 56.250 | |
| Atauschii_AET6Gv20530500.5 AET6Gv20530500.5 |
High | No | 1202 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -32.912 AMFE: -0.569 GC content %: 57.820 | |
| Atauschii_AET6Gv20530500.6 AET6Gv20530500.6 |
High | No | 879 | OG0004809 | Get ORF Coding potential... Type: noncoding Potential: -0.797 Folding energies... MFEI: -32.958 AMFE: -0.538 GC content %: 61.206 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
