Atauschii AET6Gv20544300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20544300 [ AET6Gv20544300] |
6D | 280148730 | 280151888 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20544300.1 AET6Gv20544300.1 |
Low | No | 3058 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.115 Folding energies... MFEI: -24.889 AMFE: -0.618 GC content %: 40.255 | |
| Atauschii_AET6Gv20544300.10 AET6Gv20544300.10 |
Low | No | 2331 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -23.479 AMFE: -0.604 GC content %: 38.867 | |
| Atauschii_AET6Gv20544300.2 AET6Gv20544300.2 |
Low | No | 2602 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -23.643 AMFE: -0.608 GC content %: 38.893 | |
| Atauschii_AET6Gv20544300.3 AET6Gv20544300.3 |
Low | No | 2764 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -23.799 AMFE: -0.616 GC content %: 38.640 | |
| Atauschii_AET6Gv20544300.4 AET6Gv20544300.4 |
Low | No | 2865 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.107 Folding energies... MFEI: -25.096 AMFE: -0.616 GC content %: 40.768 | |
| Atauschii_AET6Gv20544300.5 AET6Gv20544300.5 |
High | No | 903 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -24.729 AMFE: -0.586 GC content %: 42.193 | |
| Atauschii_AET6Gv20544300.6 AET6Gv20544300.6 |
Low | No | 1525 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.797 Folding energies... MFEI: -21.403 AMFE: -0.582 GC content %: 36.787 | |
| Atauschii_AET6Gv20544300.7 AET6Gv20544300.7 |
High | No | 1237 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -24.648 AMFE: -0.569 GC content %: 43.331 | |
| Atauschii_AET6Gv20544300.8 AET6Gv20544300.8 |
Low | No | 822 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -22.007 AMFE: -0.535 GC content %: 41.119 | |
| Atauschii_AET6Gv20544300.9 AET6Gv20544300.9 |
High | No | 1051 | OG0001922 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -24.853 AMFE: -0.609 GC content %: 40.818 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20544300.2 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.3 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.1 | SwissProt | 2021-04-01 | Q5ZD81 | 3.02e-12 |
| Atauschii_AET6Gv20544300.4 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.4 | SwissProt | 2021-04-01 | Q5ZD81 | 2.81e-12 |
| Atauschii_AET6Gv20544300.6 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.1 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.8 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Atauschii_AET6Gv20544300.10 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
