Atauschii AET6Gv20549900
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20549900 [ AET6Gv20549900] |
6D | 285987332 | 285994461 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Atauschii_AET6Gv20549900.29 AET6Gv20549900.29 |
High | No | 998 | OG0007055 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -30.892 AMFE: -0.613 GC content %: 50.401 | |
| Atauschii_AET6Gv20549900.30 AET6Gv20549900.30 |
High | No | 999 | OG0007055 | Get ORF Coding potential... Type: noncoding Potential: -1.108 Folding energies... MFEI: -30.971 AMFE: -0.614 GC content %: 50.450 | |
| Atauschii_AET6Gv20549900.34 AET6Gv20549900.34 |
High | No | 805 | OG0007055 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -26.795 AMFE: -0.660 GC content %: 40.621 | |
| Atauschii_AET6Gv20549900.39 AET6Gv20549900.39 |
High | No | 864 | OG0007055 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -29.803 AMFE: -0.634 GC content %: 46.991 | |
| Atauschii_AET6Gv20549900.40 AET6Gv20549900.40 |
High | No | 1180 | OG0007055 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -29.610 AMFE: -0.658 GC content %: 45.000 | |
| Atauschii_AET6Gv20549900.46 AET6Gv20549900.46 |
Low | No | 2110 | OG0010146 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -28.133 AMFE: -0.657 GC content %: 42.796 | |
| Atauschii_AET6Gv20549900.47 AET6Gv20549900.47 |
Low | No | 3870 | OG0010146 | Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -27.659 AMFE: -0.676 GC content %: 40.904 | |
| Atauschii_AET6Gv20549900.53 AET6Gv20549900.53 |
Low | No | 1595 | OG0010146 | Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -26.113 AMFE: -0.642 GC content %: 40.690 | |
| Atauschii_AET6Gv20549900.59 AET6Gv20549900.59 |
Low | No | 1210 | OG0010146 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -29.760 AMFE: -0.646 GC content %: 46.033 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Atauschii_AET6Gv20549900.47 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1; LTR/Gypsy | |
| Atauschii_AET6Gv20549900.53 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET6Gv20549900.59 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Atauschii_AET6Gv20549900.46 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
