Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20554000 [ AET6Gv20554000] |
6D | 287581044 | 287596597 | v4 | Aegilops tauschii (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Atauschii_AET6Gv20554000.17 AET6Gv20554000.17 |
High | No | 2839 | OG0000143 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -26.453 AMFE: -0.655 GC content %: 40.366 | |
Atauschii_AET6Gv20554000.40 AET6Gv20554000.40 |
High | No | 2189 | OG0000143 | Get ORF Coding potential... Type: noncoding Potential: -1.307 Folding energies... MFEI: -25.715 AMFE: -0.658 GC content %: 39.059 | |
Atauschii_AET6Gv20554000.54 AET6Gv20554000.54 |
Low | No | 430 | OG0078885 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -32.605 AMFE: -0.620 GC content %: 52.558 | |
Atauschii_AET6Gv20554000.58 AET6Gv20554000.58 |
High | No | 651 | OG0025944 | Get ORF Coding potential... Type: noncoding Potential: -1.111 Folding energies... MFEI: -28.187 AMFE: -0.565 GC content %: 49.923 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Atauschii_AET6Gv20554000.54 | SwissProt | 2021-04-01 | D5LXJ0 | 8.0e-8 |